Alignment of alleles: Charr (Salvelinus alpinus) IGHV3S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                     S   E   H   N   Q   P   N   S       L   S   V   K   R   E   E   T   L   T
  AJ000366,IGHV3S1*01               AGT GAA CAC AAC CAG CCA AAC TCA ... TTG AGT GTA AAG CGT GAA GAA ACT TTG ACT

                                                        _________________CDR1-IMGT______________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 I   S   C   A   I   S   G   Y   S   L   T   D   N   S   Y   V           V   A
  AJ000366,IGHV3S1*01           ATT AGT TGT GCA ATC TCG GGG TAT TCT CTT ACA GAC AAC AGC TAT GTG ... ... GTA GCC

                                                                                            _____________CDR2-IM
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   N   R   Q   P   A   K   K   P   M   E   C   I   F   Y   I   W   G   G   G
  AJ000366,IGHV3S1*01           TGG AAC CGA CAG CCT GCA AAG AAA CCA ATG GAA TGT ATT TTT TAT ATT TGG GGT GGT GGT

                                GT__________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 S   F               Y   L   N   N   A   L   K       N   K   F   S   F   R   R
  AJ000366,IGHV3S1*01           AGT TTT ... ... ... TAC CTT AAC AAC GCA CTA AAA ... AAC AAG TTC AGC TTT AGA AGA

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 D   M   S   S   S   T   S   T   L   T   G   Q   N   L   Q   T   E   D   T   A
  AJ000366,IGHV3S1*01           GAC ATG TCC AGC AGT ACT TCA ACT CTA ACA GGA CAG AAC CTG CAG ACT GAA GAT ACA GCT

                                                CDR3-IMGT
                                101 102 103 104 105 106
                                 V   Y   Y   C   A   R
  AJ000366,IGHV3S1*01           GTG TAT TAT TGT GCT CGG  #c
#c: rearranged cDNA

This alignement has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 03/07/2003
Author: Nathalie Bosc